IL_6TC3_025

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_025 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0834

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6TC3|1|16S1|U|409
6TC3|1|16S1|G|410
6TC3|1|16S1|A|411
6TC3|1|16S1|A|412
6TC3|1|16S1|G|413
6TC3|1|16S1|A|414
6TC3|1|16S1|A|415
6TC3|1|16S1|G|416
*
6TC3|1|16S1|U|427
6TC3|1|16S1|G|428
6TC3|1|16S1|U|429
6TC3|1|16S1|A|430
6TC3|1|16S1|A|431
6TC3|1|16S1|A|432
6TC3|1|16S1|G|433

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S041

30S ribosomal protein S4