IL_6TC3_043

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_043 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0628

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6TC3|1|16S1|C|779
6TC3|1|16S1|A|780
6TC3|1|16S1|A|781
6TC3|1|16S1|A|782
6TC3|1|16S1|C|783
*
6TC3|1|16S1|G|799
6TC3|1|16S1|G|800
6TC3|1|16S1|U|801
6TC3|1|16S1|A|802
6TC3|1|16S1|G|803

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain 23S1

Large subunit ribosomal RNA; LSU rRNA

Chain S111

30S ribosomal protein S11

Chain S211

30S ribosomal protein S21