IL_6TC3_063

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_063 not in the Motif Atlas

Homologous match to IL_5J7L_057

Geometric discrepancy: 0.095

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6TC3|1|16S1|C|1303
6TC3|1|16S1|G|1304
6TC3|1|16S1|G|1305
6TC3|1|16S1|A|1306
6TC3|1|16S1|U|1307
6TC3|1|16S1|U|1308
*
6TC3|1|16S1|A|1329
6TC3|1|16S1|U|1330
6TC3|1|16S1|G|1331
6TC3|1|16S1|A|1332
6TC3|1|16S1|A|1333
6TC3|1|16S1|G|1334

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S131

30S ribosomal protein S13