IL_6TC3_072

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_072 not in the Motif Atlas

Homologous match to IL_5J7L_245

Geometric discrepancy: 0.0582

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6TC3|1|23S1|G|24
6TC3|1|23S1|U|25
6TC3|1|23S1|G|26
6TC3|1|23S1|G|27
6TC3|1|23S1|A|28
6TC3|1|23S1|U|29
6TC3|1|23S1|G|30
*
6TC3|1|23S1|C|510
6TC3|1|23S1|U|511
6TC3|1|23S1|G|512
6TC3|1|23S1|A|513
6TC3|1|23S1|A|514
6TC3|1|23S1|A|515
6TC3|1|23S1|C|516

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L201

50S ribosomal protein L20

Chain L221

50S ribosomal protein L22

Chain L321

50S ribosomal protein L32