IL_6TC3_077

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_077 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.0572

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6TC3|1|23S1|G|188
6TC3|1|23S1|G|189
6TC3|1|23S1|A|190
6TC3|1|23S1|A|191
6TC3|1|23S1|C|192
6TC3|1|23S1|U|193
6TC3|1|23S1|G|194
*
6TC3|1|23S1|C|201
6TC3|1|23S1|U|202
6TC3|1|23S1|A|203
6TC3|1|23S1|A|204
6TC3|1|23S1|G|205
6TC3|1|23S1|U|206
6TC3|1|23S1|A|207
6TC3|1|23S1|C|208

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L151

50S ribosomal protein L15

Chain L281

50S ribosomal protein L28