IL_6TC3_080

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_080 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2107

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6TC3|1|23S1|C|274
6TC3|1|23S1|C|275
6TC3|1|23S1|U|276
6TC3|1|23S1|G|277
6TC3|1|23S1|A|278
6TC3|1|23S1|A|279
6TC3|1|23S1|U|280
6TC3|1|23S1|C|281
*
6TC3|1|23S1|G|359
6TC3|1|23S1|U|360
6TC3|1|23S1|G|361
6TC3|1|23S1|A|362
6TC3|1|23S1|G|363

Current chains

Chain 23S1

23S rRNA

Nearby chains