IL_6TC3_082

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

6TC3|1|23S1|A|504, 6TC3|1|23S1|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_082 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0634

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

6TC3|1|23S1|G|481
6TC3|1|23S1|A|482
6TC3|1|23S1|A|483
6TC3|1|23S1|C|484
*
6TC3|1|23S1|G|496
6TC3|1|23S1|A|497
6TC3|1|23S1|G|498
6TC3|1|23S1|U|499
6TC3|1|23S1|G|500
6TC3|1|23S1|A|501
6TC3|1|23S1|A|502
6TC3|1|23S1|A|503
6TC3|1|23S1|A|504
6TC3|1|23S1|A|505
6TC3|1|23S1|G|506
6TC3|1|23S1|A|507
6TC3|1|23S1|A|508
6TC3|1|23S1|C|509

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L221

50S ribosomal protein L22

Chain L241

50S ribosomal protein L24