IL_6TC3_100

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_100 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.1875

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6TC3|1|23S1|G|875
6TC3|1|23S1|C|876
6TC3|1|23S1|A|877
6TC3|1|23S1|A|878
6TC3|1|23S1|G|879
*
6TC3|1|23S1|C|898
6TC3|1|23S1|A|899
6TC3|1|23S1|A|900
6TC3|1|23S1|C|901
6TC3|1|23S1|C|902

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L161

50S ribosomal protein L16