IL_6TC3_112

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

6TC3|1|23S1|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_112 not in the Motif Atlas

Homologous match to IL_9DFE_043

Geometric discrepancy: 0.2884

The information below is about IL_9DFE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TC3|1|23S1|G|1087
6TC3|1|23S1|A|1088
6TC3|1|23S1|A|1089
6TC3|1|23S1|A|1090
6TC3|1|23S1|G|1091
*
6TC3|1|23S1|C|1100
6TC3|1|23S1|U|1101
6TC3|1|23S1|C|1102

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L361

50S ribosomal protein L36