IL_6TC3_162

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

6TC3|1|23S1|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_162 not in the Motif Atlas

Homologous match to IL_4WF9_088

Geometric discrepancy: 0.3615

The information below is about IL_4WF9_088

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6TC3|1|23S1|U|2401
6TC3|1|23S1|U|2402
6TC3|1|23S1|C|2403
*
6TC3|1|23S1|G|2414
6TC3|1|23S1|G|2415

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L151

50S ribosomal protein L15

Chain L331

50S ribosomal protein L33

Chain L351

50S ribosomal protein L35