IL_6TC3_172

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6TC3|1|23S1|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_172 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.1747

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6TC3|1|23S1|C|2591
6TC3|1|23S1|G|2592
*
6TC3|1|23S1|C|2601
6TC3|1|23S1|A|2602
6TC3|1|23S1|G|2603

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L021

50S ribosomal protein L2

Chain PTR1

Transfer RNA; tRNA

Chain SPE1

SpeFL