IL_6TC3_184

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGACC*GGC

Length

8 nucleotides

Bulged bases

6TC3|1|16S1|G|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_184 not in the Motif Atlas

Homologous match to IL_5J7L_013

Geometric discrepancy: 0.4618

The information below is about IL_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66997.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6TC3|1|16S1|G|203
6TC3|1|16S1|G|204
6TC3|1|16S1|A|205
6TC3|1|16S1|C|206
6TC3|1|16S1|C|207
*
6TC3|1|16S1|G|212
6TC3|1|16S1|G|213
6TC3|1|16S1|C|214

Current chains

Chain 16S1

16S rRNA

Nearby chains