IL_6TC3_194

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGAGG*CCGACCUUGAAAUACC

Length

22 nucleotides

Bulged bases

6TC3|1|23S1|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_194 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.3947

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

6TC3|1|23S1|G|2123
6TC3|1|23S1|G|2124
6TC3|1|23S1|G|2125
6TC3|1|23S1|A|2126
6TC3|1|23S1|G|2127
6TC3|1|23S1|G|2128
*
6TC3|1|23S1|C|2160
6TC3|1|23S1|C|2161
6TC3|1|23S1|G|2162
6TC3|1|23S1|A|2163
6TC3|1|23S1|C|2164
6TC3|1|23S1|C|2165
6TC3|1|23S1|U|2166
6TC3|1|23S1|U|2167
6TC3|1|23S1|G|2168
6TC3|1|23S1|A|2169
6TC3|1|23S1|A|2170
6TC3|1|23S1|A|2171
6TC3|1|23S1|U|2172
6TC3|1|23S1|A|2173
6TC3|1|23S1|C|2174
6TC3|1|23S1|C|2175

Current chains

Chain 23S1

23S rRNA

Nearby chains