IL_6TH6_070

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

UUAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_070 not in the Motif Atlas

Homologous match to IL_4V9F_007

Geometric discrepancy: 0.1436

The information below is about IL_4V9F_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

6TH6|1|BA|U|230
6TH6|1|BA|U|231
6TH6|1|BA|A|232
6TH6|1|BA|G|233
6TH6|1|BA|U|234
6TH6|1|BA|A|235
6TH6|1|BA|G|236
*
6TH6|1|BA|C|244
6TH6|1|BA|G|245
6TH6|1|BA|A|246
6TH6|1|BA|A|247
6TH6|1|BA|A|248
6TH6|1|BA|G|249

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BP

50S ribosomal protein L15e