IL_6TH6_083

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGUUGACC*GUGAC

Length

13 nucleotides

Bulged bases

6TH6|1|BA|U|588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_083 not in the Motif Atlas

Geometric match to IL_3NVI_002

Geometric discrepancy: 0.1366

The information below is about IL_3NVI_002

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_69229.3

Basepair signature

cWW-L-tSH-L-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6TH6|1|BA|G|585
6TH6|1|BA|G|586
6TH6|1|BA|U|587
6TH6|1|BA|U|588
6TH6|1|BA|G|589
6TH6|1|BA|A|590
6TH6|1|BA|C|591
6TH6|1|BA|C|592
*
6TH6|1|BA|G|635
6TH6|1|BA|U|636
6TH6|1|BA|G|637
6TH6|1|BA|A|638
6TH6|1|BA|C|639

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BI

50S ribosomal protein L7Ae

Chain Bd

50S ribosomal protein L32e