IL_6TH6_085

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGAAAC*GGAGUAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_085 not in the Motif Atlas

Homologous match to IL_4V9F_019

Geometric discrepancy: 0.1823

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6TH6|1|BA|G|602
6TH6|1|BA|G|603
6TH6|1|BA|A|604
6TH6|1|BA|A|605
6TH6|1|BA|A|606
6TH6|1|BA|C|607
*
6TH6|1|BA|G|620
6TH6|1|BA|G|621
6TH6|1|BA|A|622
6TH6|1|BA|G|623
6TH6|1|BA|U|624
6TH6|1|BA|A|625
6TH6|1|BA|C|626

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Ba

50S ribosomal protein L30