IL_6TH6_096

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

6TH6|1|BA|G|904, 6TH6|1|BA|A|916, 6TH6|1|BA|A|917

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_096 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0752

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6TH6|1|BA|G|903
6TH6|1|BA|G|904
6TH6|1|BA|G|905
*
6TH6|1|BA|C|915
6TH6|1|BA|A|916
6TH6|1|BA|A|917
6TH6|1|BA|U|918
6TH6|1|BA|C|919

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BP

50S ribosomal protein L15e

Chain BV

50S ribosomal protein L22

Chain Bh

50S ribosomal protein L37e