IL_6TH6_101
3D structure
- PDB id
- 6TH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- GGUAG*CGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TH6_101 not in the Motif Atlas
- Geometric match to IL_4V9F_033
- Geometric discrepancy: 0.121
- The information below is about IL_4V9F_033
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.5
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6TH6|1|BA|G|987
6TH6|1|BA|G|988
6TH6|1|BA|U|989
6TH6|1|BA|A|990
6TH6|1|BA|G|991
*
6TH6|1|BA|C|1044
6TH6|1|BA|G|1045
6TH6|1|BA|A|1046
6TH6|1|BA|A|1047
6TH6|1|BA|C|1048
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BJ
- 50S ribosomal protein L10e
- Chain BQ
- 50S ribosomal protein L18
- Chain BU
- 50S ribosomal protein L21e
- Chain Ba
- 50S ribosomal protein L30
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