IL_6TH6_115

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CGU*AUUG

Length

7 nucleotides

Bulged bases

6TH6|1|BA|U|1383

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_115 not in the Motif Atlas

Homologous match to IL_4V9F_046

Geometric discrepancy: 0.1238

The information below is about IL_4V9F_046

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

6TH6|1|BA|C|1332
6TH6|1|BA|G|1333
6TH6|1|BA|U|1334
*
6TH6|1|BA|A|1382
6TH6|1|BA|U|1383
6TH6|1|BA|U|1384
6TH6|1|BA|G|1385

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BO

50S ribosomal protein L15

Chain Bd

50S ribosomal protein L32e