IL_6TH6_141

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GUAUG*CAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_141 not in the Motif Atlas

Geometric match to IL_6DLR_002

Geometric discrepancy: 0.3372

The information below is about IL_6DLR_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_83497.1

Basepair signature

cWW-L-R-cSH-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6TH6|1|BA|G|1974
6TH6|1|BA|U|1975
6TH6|1|BA|A|1976
6TH6|1|BA|U|1977
6TH6|1|BA|G|1978
*
6TH6|1|BA|C|2005
6TH6|1|BA|A|2006
6TH6|1|BA|C|2007

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2