IL_6TNN_037

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNN_037 not in the Motif Atlas

Geometric match to IL_4WF9_037

Geometric discrepancy: 0.1061

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6TNN|1|U|U|1048
6TNN|1|U|C|1049
6TNN|1|U|C|1050
6TNN|1|U|C|1051
6TNN|1|U|A|1052
6TNN|1|U|A|1053
6TNN|1|U|A|1054
6TNN|1|U|G|1055
*
6TNN|1|U|C|1194
6TNN|1|U|A|1195

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain c

50S ribosomal protein L13

Chain j

50S ribosomal protein L20