IL_6TNN_052

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNN_052 not in the Motif Atlas

Homologous match to IL_4WF9_052

Geometric discrepancy: 0.122

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6TNN|1|U|C|1394
6TNN|1|U|G|1395
6TNN|1|U|A|1396
6TNN|1|U|G|1397
6TNN|1|U|G|1398
*
6TNN|1|U|C|1407
6TNN|1|U|G|1408
6TNN|1|U|U|1409
6TNN|1|U|A|1410
6TNN|1|U|G|1411

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2

Chain r

50S ribosomal protein L34

Chain u

50S ribosomal protein L28