IL_6TNN_076

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNN_076 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.2398

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6TNN|1|U|A|1883
6TNN|1|U|G|1884
6TNN|1|U|G|1885
6TNN|1|U|A|1886
6TNN|1|U|G|1887
*
6TNN|1|U|C|1909
6TNN|1|U|G|1910
6TNN|1|U|A|1911
6TNN|1|U|A|1912
6TNN|1|U|U|1913

Current chains

Chain U

pre-23S rRNA

Nearby chains