IL_6TNN_084

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

6TNN|1|U|G|2265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNN_084 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.1358

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6TNN|1|U|C|2108
6TNN|1|U|A|2109
6TNN|1|U|G|2110
*
6TNN|1|U|U|2263
6TNN|1|U|G|2264
6TNN|1|U|G|2265
6TNN|1|U|G|2266

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2

Chain u

50S ribosomal protein L28