IL_6TNU_011

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUAAC*GCUAAUA

Length

13 nucleotides

Bulged bases

6TNU|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_011 not in the Motif Atlas

Geometric match to IL_4LFB_009

Geometric discrepancy: 0.2289

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

6TNU|1|2|U|144
6TNU|1|2|A|145
6TNU|1|2|U|146
6TNU|1|2|A|147
6TNU|1|2|A|148
6TNU|1|2|C|149
*
6TNU|1|2|G|165
6TNU|1|2|C|166
6TNU|1|2|U|167
6TNU|1|2|A|168
6TNU|1|2|A|169
6TNU|1|2|U|170
6TNU|1|2|A|171

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AE

60S ribosomal protein L24-A

Chain T

40S ribosomal protein S6-A

Chain d

40S ribosomal protein S24-A