IL_6TNU_013

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_013 not in the Motif Atlas

Homologous match to IL_4V88_396

Geometric discrepancy: 0.3237

The information below is about IL_4V88_396

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6TNU|1|2|C|186
6TNU|1|2|G|187
6TNU|1|2|A|188
6TNU|1|2|C|189
*
6TNU|1|2|G|196
6TNU|1|2|A|197
6TNU|1|2|A|198
6TNU|1|2|G|199

Current chains

Chain 2

18S rRNA

Nearby chains

Chain V

40S ribosomal protein S8