IL_6TNU_021

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6TNU|1|2|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_021 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1518

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6TNU|1|2|G|363
6TNU|1|2|G|364
6TNU|1|2|G|365
*
6TNU|1|2|C|376
6TNU|1|2|G|377
6TNU|1|2|A|378
6TNU|1|2|U|379
6TNU|1|2|U|380
6TNU|1|2|C|381

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A