IL_6TNU_030

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_030 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2223

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

6TNU|1|2|A|550
6TNU|1|2|G|551
6TNU|1|2|G|552
6TNU|1|2|G|553
6TNU|1|2|C|554
6TNU|1|2|A|555
6TNU|1|2|A|556
6TNU|1|2|G|557
*
6TNU|1|2|C|587
6TNU|1|2|U|588

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

40S ribosomal protein S2

Chain W

40S ribosomal protein S9-A

Chain g

40S ribosomal protein S30-A