IL_6TNU_051

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_051 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1145

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6TNU|1|2|G|1111
6TNU|1|2|G|1112
6TNU|1|2|A|1113
6TNU|1|2|G|1114
6TNU|1|2|U|1115
6TNU|1|2|A|1116
6TNU|1|2|U|1117
6TNU|1|2|G|1118
*
6TNU|1|2|U|1129
6TNU|1|2|G|1130
6TNU|1|2|A|1131
6TNU|1|2|A|1132
6TNU|1|2|A|1133
6TNU|1|2|C|1134

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AS

60S ribosomal protein L41-A

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain c

40S ribosomal protein S23-A