IL_6TNU_071
3D structure
- PDB id
- 6TNU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TNU_071 not in the Motif Atlas
- Homologous match to IL_4V88_459
- Geometric discrepancy: 0.1468
- The information below is about IL_4V88_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10447.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6TNU|1|2|G|1480
6TNU|1|2|C|1481
6TNU|1|2|C|1482
6TNU|1|2|A|1483
6TNU|1|2|G|1484
6TNU|1|2|C|1485
6TNU|1|2|G|1486
6TNU|1|2|A|1487
*
6TNU|1|2|U|1519
6TNU|1|2|U|1520
6TNU|1|2|G|1521
6TNU|1|2|U|1522
6TNU|1|2|G|1523
6TNU|1|2|A|1524
6TNU|1|2|A|1525
6TNU|1|2|A|1526
6TNU|1|2|C|1527
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- 40S ribosomal protein S3
- Chain B
- Rps5p
- Chain F
- 40S ribosomal protein S16-A
- Chain I
- 40S ribosomal protein S19-A
- Chain J
- 40S ribosomal protein S20
- Chain M
- 40S ribosomal protein S29-A
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