IL_6TNU_080

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_080 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.1194

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6TNU|1|2|C|1653
6TNU|1|2|G|1654
6TNU|1|2|A|1655
6TNU|1|2|U|1656
*
6TNU|1|2|A|1744
6TNU|1|2|G|1745
6TNU|1|2|A|1746
6TNU|1|2|G|1747

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain AS

60S ribosomal protein L41-A

Chain BQ

Large subunit ribosomal RNA; LSU rRNA