IL_6TNU_084

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_084 not in the Motif Atlas

Homologous match to IL_4V88_472

Geometric discrepancy: 0.2029

The information below is about IL_4V88_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6TNU|1|2|G|1672
6TNU|1|2|G|1673
6TNU|1|2|C|1674
*
6TNU|1|2|G|1727
6TNU|1|2|A|1728
6TNU|1|2|C|1729

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AE

60S ribosomal protein L24-A

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8