IL_6TNU_118
3D structure
- PDB id
- 6TNU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6TNU|1|BQ|A|933, 6TNU|1|BQ|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TNU_118 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.1016
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6TNU|1|BQ|G|805
6TNU|1|BQ|A|806
6TNU|1|BQ|A|807
6TNU|1|BQ|A|808
6TNU|1|BQ|G|809
*
6TNU|1|BQ|C|931
6TNU|1|BQ|U|932
6TNU|1|BQ|A|933
6TNU|1|BQ|G|934
6TNU|1|BQ|U|935
6TNU|1|BQ|A|936
6TNU|1|BQ|G|937
6TNU|1|BQ|C|938
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AR
- 60S ribosomal protein L28
- Chain BE
- 60S ribosomal protein L4-A
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