IL_6TNU_161

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_161 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.1627

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6TNU|1|BQ|U|1702
6TNU|1|BQ|U|1703
6TNU|1|BQ|A|1704
6TNU|1|BQ|U|1705
6TNU|1|BQ|C|1706
6TNU|1|BQ|A|1707
*
6TNU|1|BQ|U|1737
6TNU|1|BQ|C|1738
6TNU|1|BQ|U|1739
6TNU|1|BQ|U|1740
6TNU|1|BQ|A|1741
6TNU|1|BQ|U|1742
6TNU|1|BQ|G|1743

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BN

60S ribosomal protein L34-A