3D structure

PDB id
6TNU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCAAAUGCCUCG*CGCG
Length
16 nucleotides
Bulged bases
6TNU|1|BQ|A|2281, 6TNU|1|BQ|C|2287, 6TNU|1|BQ|C|2306
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6TNU_179 not in the Motif Atlas
Geometric match to IL_5TBW_090
Geometric discrepancy: 0.137
The information below is about IL_5TBW_090
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_66080.1
Basepair signature
cWW-cWW-tSH-L-cWW-L
Number of instances in this motif group
5

Unit IDs

6TNU|1|BQ|C|2277
6TNU|1|BQ|C|2278
6TNU|1|BQ|A|2279
6TNU|1|BQ|A|2280
6TNU|1|BQ|A|2281
6TNU|1|BQ|U|2282
6TNU|1|BQ|G|2283
6TNU|1|BQ|C|2284
6TNU|1|BQ|C|2285
6TNU|1|BQ|U|2286
6TNU|1|BQ|C|2287
6TNU|1|BQ|G|2288
*
6TNU|1|BQ|C|2304
6TNU|1|BQ|G|2305
6TNU|1|BQ|C|2306
6TNU|1|BQ|G|2307

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain AS
60S ribosomal protein L41-A
Chain m
Transfer RNA; tRNA

Coloring options:


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