IL_6TNU_179
3D structure
- PDB id
- 6TNU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 6TNU|1|BQ|A|2281, 6TNU|1|BQ|C|2287, 6TNU|1|BQ|C|2306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TNU_179 not in the Motif Atlas
- Geometric match to IL_5TBW_090
- Geometric discrepancy: 0.137
- The information below is about IL_5TBW_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6TNU|1|BQ|C|2277
6TNU|1|BQ|C|2278
6TNU|1|BQ|A|2279
6TNU|1|BQ|A|2280
6TNU|1|BQ|A|2281
6TNU|1|BQ|U|2282
6TNU|1|BQ|G|2283
6TNU|1|BQ|C|2284
6TNU|1|BQ|C|2285
6TNU|1|BQ|U|2286
6TNU|1|BQ|C|2287
6TNU|1|BQ|G|2288
*
6TNU|1|BQ|C|2304
6TNU|1|BQ|G|2305
6TNU|1|BQ|C|2306
6TNU|1|BQ|G|2307
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AS
- 60S ribosomal protein L41-A
- Chain m
- Transfer RNA; tRNA
Coloring options: