IL_6TNU_195

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_195 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.1358

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6TNU|1|BQ|G|2828
6TNU|1|BQ|U|2829
6TNU|1|BQ|G|2830
*
6TNU|1|BQ|U|2858
6TNU|1|BQ|U|2859
6TNU|1|BQ|U|2860
6TNU|1|BQ|U|2861
6TNU|1|BQ|U|2862

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BA

60S ribosomal protein L3

Chain BD

60S ribosomal protein L10

Chain m

Transfer RNA; tRNA