IL_6TNU_240

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_240 not in the Motif Atlas

Homologous match to IL_8P9A_415

Geometric discrepancy: 0.4501

The information below is about IL_8P9A_415

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6TNU|1|2|U|822
6TNU|1|2|G|823
6TNU|1|2|G|824
*
6TNU|1|2|C|848
6TNU|1|2|C|849
6TNU|1|2|A|850

Current chains

Chain 2

18S rRNA

Nearby chains

Chain BF

60S ribosomal protein L19-A