IL_6TPQ_001
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TPQ_001 not in the Motif Atlas
- Geometric match to IL_4WF9_001
- Geometric discrepancy: 0.0974
- The information below is about IL_4WF9_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
6TPQ|1|U|G|22
6TPQ|1|U|U|23
6TPQ|1|U|G|24
6TPQ|1|U|G|25
6TPQ|1|U|A|26
6TPQ|1|U|U|27
6TPQ|1|U|G|28
*
6TPQ|1|U|C|554
6TPQ|1|U|U|555
6TPQ|1|U|G|556
6TPQ|1|U|A|557
6TPQ|1|U|A|558
6TPQ|1|U|A|559
6TPQ|1|U|C|560
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain j
- 50S ribosomal protein L20
- Chain l
- 50S ribosomal protein L22
- Chain p
- 50S ribosomal protein L32
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