IL_6TPQ_007
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TPQ_007 not in the Motif Atlas
- Homologous match to IL_7A0S_006
- Geometric discrepancy: 0.0865
- The information below is about IL_7A0S_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
6TPQ|1|U|G|189
6TPQ|1|U|G|190
6TPQ|1|U|A|191
6TPQ|1|U|A|192
6TPQ|1|U|C|193
6TPQ|1|U|U|194
6TPQ|1|U|G|195
*
6TPQ|1|U|C|202
6TPQ|1|U|U|203
6TPQ|1|U|A|204
6TPQ|1|U|A|205
6TPQ|1|U|G|206
6TPQ|1|U|U|207
6TPQ|1|U|A|208
6TPQ|1|U|C|209
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain e
- 50S ribosomal protein L15
- Chain s
- 50S ribosomal protein L35
- Chain u
- 50S ribosomal protein L28
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