IL_6TPQ_012

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_012 not in the Motif Atlas

Homologous match to IL_5J7L_254

Geometric discrepancy: 0.1989

The information below is about IL_5J7L_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

6TPQ|1|U|U|334
6TPQ|1|U|A|335
6TPQ|1|U|G|336
*
6TPQ|1|U|C|385
6TPQ|1|U|A|386
6TPQ|1|U|A|387
6TPQ|1|U|A|388
6TPQ|1|U|A|389

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain n

50S ribosomal protein L24