IL_6TPQ_016

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_016 not in the Motif Atlas

Homologous match to IL_4WF9_017

Geometric discrepancy: 0.1551

The information below is about IL_4WF9_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

6TPQ|1|U|C|606
6TPQ|1|U|C|607
6TPQ|1|U|U|608
*
6TPQ|1|U|A|617
6TPQ|1|U|U|618
6TPQ|1|U|G|619

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain e

50S ribosomal protein L15

Chain j

50S ribosomal protein L20

Chain k

50S ribosomal protein L21