IL_6TPQ_017

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CCC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_017 not in the Motif Atlas

Homologous match to IL_4WF9_018

Geometric discrepancy: 0.3227

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

6TPQ|1|U|C|637
6TPQ|1|U|C|638
6TPQ|1|U|C|639
*
6TPQ|1|U|G|705
6TPQ|1|U|U|706
6TPQ|1|U|G|707

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L4

Chain e

50S ribosomal protein L15

Chain s

50S ribosomal protein L35