IL_6TPQ_020
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6TPQ|1|U|G|846, 6TPQ|1|U|G|850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TPQ_020 not in the Motif Atlas
- Homologous match to IL_5J7L_260
- Geometric discrepancy: 0.1198
- The information below is about IL_5J7L_260
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6TPQ|1|U|G|719
6TPQ|1|U|A|720
6TPQ|1|U|A|721
6TPQ|1|U|A|722
6TPQ|1|U|C|723
*
6TPQ|1|U|G|844
6TPQ|1|U|A|845
6TPQ|1|U|G|846
6TPQ|1|U|A|847
6TPQ|1|U|U|848
6TPQ|1|U|A|849
6TPQ|1|U|G|850
6TPQ|1|U|C|851
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain Y
- 50S ribosomal protein L4
- Chain e
- 50S ribosomal protein L15
Coloring options: