IL_6TPQ_023

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_023 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0979

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6TPQ|1|U|U|748
6TPQ|1|U|G|749
6TPQ|1|U|A|750
6TPQ|1|U|A|751
6TPQ|1|U|G|752
*
6TPQ|1|U|U|769
6TPQ|1|U|G|770
6TPQ|1|U|G|771
6TPQ|1|U|A|772
6TPQ|1|U|G|773

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2