IL_6TPQ_025

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

6TPQ|1|U|G|821, 6TPQ|1|U|A|833, 6TPQ|1|U|A|834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_025 not in the Motif Atlas

Geometric match to IL_7A0S_021

Geometric discrepancy: 0.0738

The information below is about IL_7A0S_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_89509.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

6TPQ|1|U|G|820
6TPQ|1|U|G|821
6TPQ|1|U|G|822
*
6TPQ|1|U|C|832
6TPQ|1|U|A|833
6TPQ|1|U|A|834
6TPQ|1|U|U|835
6TPQ|1|U|C|836

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2

Chain l

50S ribosomal protein L22

Chain r

50S ribosomal protein L34