IL_6TPQ_027
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GUAAG*UAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TPQ_027 not in the Motif Atlas
- Homologous match to IL_4WF9_029
- Geometric discrepancy: 0.3607
- The information below is about IL_4WF9_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_01742.1
- Basepair signature
- cWW-L-cWW-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6TPQ|1|U|G|889
6TPQ|1|U|U|890
6TPQ|1|U|A|891
6TPQ|1|U|A|892
6TPQ|1|U|G|893
*
6TPQ|1|U|U|975
6TPQ|1|U|A|976
6TPQ|1|U|U|977
6TPQ|1|U|C|978
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain w
- 50S ribosomal protein L30
Coloring options: