IL_6TPQ_037

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_037 not in the Motif Atlas

Homologous match to IL_4WF9_037

Geometric discrepancy: 0.1092

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6TPQ|1|U|U|1048
6TPQ|1|U|C|1049
6TPQ|1|U|C|1050
6TPQ|1|U|C|1051
6TPQ|1|U|A|1052
6TPQ|1|U|A|1053
6TPQ|1|U|A|1054
6TPQ|1|U|G|1055
*
6TPQ|1|U|C|1194
6TPQ|1|U|A|1195

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain c

50S ribosomal protein L13

Chain j

50S ribosomal protein L20