IL_6TPQ_041
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 6TPQ|1|U|U|1077
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TPQ_041 not in the Motif Atlas
- Homologous match to IL_7A0S_038
- Geometric discrepancy: 0.1064
- The information below is about IL_7A0S_038
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_76400.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6TPQ|1|U|G|1075
6TPQ|1|U|A|1076
6TPQ|1|U|U|1077
6TPQ|1|U|G|1078
*
6TPQ|1|U|C|1165
6TPQ|1|U|G|1166
6TPQ|1|U|C|1167
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain V
- 5S ribosomal RNA; 5S rRNA
- Chain a
- 50S ribosomal protein L6
- Chain f
- 50S ribosomal protein L16
- Chain t
- 50S ribosomal protein L36
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