IL_6TPQ_042
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CUUAGACAA*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 6TPQ|1|U|A|1090
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TPQ_042 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.2196
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6TPQ|1|U|C|1087
6TPQ|1|U|U|1088
6TPQ|1|U|U|1089
6TPQ|1|U|A|1090
6TPQ|1|U|G|1091
6TPQ|1|U|A|1092
6TPQ|1|U|C|1093
6TPQ|1|U|A|1094
6TPQ|1|U|A|1095
*
6TPQ|1|U|U|1152
6TPQ|1|U|C|1153
6TPQ|1|U|G|1154
6TPQ|1|U|A|1155
6TPQ|1|U|G|1156
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain a
- 50S ribosomal protein L6
- Chain b
- 50S ribosomal protein L10
Coloring options: