IL_6TPQ_051

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

6TPQ|1|U|G|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_051 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.1464

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6TPQ|1|U|G|1356
6TPQ|1|U|G|1357
6TPQ|1|U|A|1358
6TPQ|1|U|A|1359
6TPQ|1|U|G|1360
*
6TPQ|1|U|C|1368
6TPQ|1|U|G|1369
6TPQ|1|U|C|1370

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain l

50S ribosomal protein L22